PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00166.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 243aa    MW: 26899.3 Da    PI: 6.9549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00166.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-2091141255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp   + k  r +lg+++ta eAa+a+++a+ +l+g
  Rsa1.0_00166.1_g00009.1  91 HYRGVRRRP-WGKYAAEIRDP---NkKGSRLWLGTYDTAVEAARAYDQAAFELRG 141
                              7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3290150IPR001471AP2/ERF domain
PROSITE profilePS5103224.94891149IPR001471AP2/ERF domain
SMARTSM003801.1E-3791155IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2391151IPR016177DNA-binding domain
PfamPF008473.0E-1491141IPR001471AP2/ERF domain
CDDcd000181.91E-3091149No hitNo description
PRINTSPR003673.0E-1392103IPR001471AP2/ERF domain
PRINTSPR003673.0E-13131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MATKQEALAI ELISQHLLTD VASMETKVSN ITFHDADSSL VASQDHDPSP RTTTKPNSTL  60
NRRKPPLPNI SVPRTVSCTI KKAEEEEETR HYRGVRRRPW GKYAAEIRDP NKKGSRLWLG  120
TYDTAVEAAR AYDQAAFELR GRKAILNFPL EVRATSDSCF VGLGKRKRLK SFPAVDEEEE  180
EKAVPVRVKD EEKERETTVA EVEAVPLTPS SWMGVWDVGG AGDGIFSVPP LTPTSPNSVV  240
SVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2788152266ATERF1
3gcc_A2e-2788152266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394488.11e-120hypothetical protein EUTSA_v10005566mg
SwissprotQ9FKG13e-99EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLV4KKN71e-120V4KKN7_EUTSA; Uncharacterized protein
STRINGBra012938.1-P1e-112(Brassica rapa)
STRINGBra029319.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.16e-97ethylene response factor 104